Selection of core collections from Kartiksail and Dhaliboro rice landraces of Bangladesh

Paper Details

Research Paper 01/06/2016
Views (253) Download (2)
current_issue_feature_image
publication_file

Selection of core collections from Kartiksail and Dhaliboro rice landraces of Bangladesh

MS Ahmed
Int. J. Agron. Agri. Res.8( 6), 10-20, June 2016.
Certificate: IJAAR 2016 [Generate Certificate]

Abstract

Rice is one of the most important cereals in the world for being as the staple food. Rice has widespread popularity across Bangladesh, where it uniquely suited to wet environments. Presently, a large number of germplasm have been collected in gene banks all over the world, but methods for the effective management and utilization of such huge collections remain a challenging task. On the other hand, the concept of core collection provides a new way of management and utilization of plant germplasm resources. Frankel first termed a collection to a core collection which would represent the genetic diversity of a crop species with a minimum of repetitiveness. But systematic study has yet been done on core collection of rice in Bangladesh. The objective of the present review study was, therefore, to select the core collections from previously agro-morphologically, physico-chemically and molecularly characterized Kartiksail and Dhaliboro rice. In the present study, the core collections were selected using the hierarchical cluster analysis, where a representative sample with high phenotypic values was drawn from each group. Moreover, the selection processes were improved by combining several evaluation methods. However, special emphasis was given on the genotypic values of the germplasm. In the conclusion, the core collections for Kartiksail landraces were KS1, KS5, KS6, KS7, KS9, KS11, KS13, KS16, KS19, KS20 and KS21, whereas that of Dhaliboro were DB3, DB4, DB7, DB8 and DB10. The selected landraces may be utilized in different hybridization programmes for developing new variety.

VIEWS 3

Ahmed MS, Khalequzzaman M, Bashar MK, Shamsuddin AKM. 2015b. Qualitative agro-morphological character diversity of similar or duplicate named rice (Oryza sativa L.) germplasm of Bangladesh. Journal of Biodiversity and Environmental Sciences 7(4), 51-61.

Ahmed MS, Khalequzzaman M, Bashar MK, Shamsuddin AKM. 2016. Agro-morphological, physico-chemical and molecular characterization of rice (Oryza sativa L.) germplasm having similar names of Bangladesh. Rice Science 23(4), 211-18.

Ahmed MS, Parveen S, Baktiar MHK, Siddique MA. 2015c. Study of qualitative agro-morphological characters of Dhaliboro rice (Oryza sativa L.) germplasm of Bangladesh. Eco-friendly Agriculture Journal 8(8), 91-96.

Ahmed MS. 2015a. Agro-morphological, physico-chemical and molecular characterization for developing core collections from similar named rice (Oryza sativa L.) groups of Bangladesh. PhD thesis, Department of Genetics and Plant Breeding, BAU, Mymensingh, Bangladesh, 41-179.

Brown AHD. 1989a. Core collections: a practical approach to genetic resources management. Genome 31, 818-824. http://dx.doi.org/10.1139/g89-144.

Brown AHD. 1989b. The case for core collections. In: Brown AHD, Marshall DR, Frankel OH, Williams JT, Eds. The use of plant genetic resources. Cambridge, UK: Cambridge University Press, p. 136-154.

Brown AHD. 1995. The core collection at the crossroads. In: Hodgkin T, Brown AHD, van Hintum TJL, Morales EAV, Eds. Core Collections of Plant Genetic Resources. Chichester, UK: John Wiley and Sons, p. 3-19.

Cui YH, Qiu LJ, Chang RZ, Lu WH. 2004. Representative test for primary core collection of summer sowing soybeans in Huanghuai Region of China. Acta Agronomica Sinica 30, 284-288.

Frankel OH. 1984. Genetic perspectives of germplasm conservation. In: Arber W, Llimensee K, Peacock WJ, Starlinger P, Eds. Genetic manipulation: impact on man and society. Cambridge, UK:Cambridge University Press, p.161-70.

Guo Y, Li Y, Hong H, Qiu LJ. 2014. Establishment of the integrated applied core collection and its comparison with mini core collection in soybean (Glycine max). The Crop Journal 2(1), 38-45. doi:10.1016/j.cj.2013.11.001.

Hu J, Zhu J, Xu HM. 2000. Methods of constructing core collections by stepwise clustering with three sampling strategies based on the genotypic values of crops. Theoretical and Applied Genetics 101, 264-68.http://dx.doi.org/10. 1007/s001220 051478.

Jackson MT, Pham JL, Newbury HJ, Ford-Lloyd BV and Virk PS. 1999. A core collection for rice-needs, opportunities and constraints. In: Johnson RC and Hodgkin T, Eds. Core collections for today and tomorrow. Rome, Italy: International Plant Genetic Resources Institute p. 18-27.

Li CT, Shi CH, Wu JG, Xu HM, Zhang HZ, Ren YL. 2004a. Methods of developing core collections based on the predicted genotypic value of rice (Oryza sativa L.).Theoretical and Applied Genetics 108, 1172-76.http://dx.doi.org/10.1007/s00122-003-1536-1.

Li Y, Shi YS, Cao YS, Wang TY. 2004b. Establishment of a core collection for maize germplasm preserved in Chinese National Genebank using geographic distribution and characterization data. Genetic Resources and Crop Evolution 51, 845-852. http://dx.doi.org/10.1007/s10722-005-8313-8.

Marita JM, Rodriguez JM, Nienhuis J. 2000. Development of an algorithm identifying maximally diverse core collections. Genet Resour Crop Evol 47(5), 515-526. doi: 10.1023/A:100878 4610962.

Singh SP, Gutierrez JA, Molina A, Urrea C, Gepts P. 1991. Genetic diversity in cultivated common bean: II. Marker-based analysis of morphological and agronomic traits. Crop Science 31, 23-29.http://dx.doi.org/10.2135/cropsci1991.0011183 x003100010005x.

Upadhyaya HD, Gowda CLL, Pundir RPS, Reddy VG, Singh S. 2006. Development of core subset of finger millet germplasm using geographical origin and data on 14 quantitative traits. Genetic Resources and Crop Evolution 53(4), 679-685.http://dx.doi.org/10.1007/s10722-004-3228-3.

van Hintum ThJL. 1995. Hierarchical approaches to the analysis of genetic diversity in crop plants. In: Hodgkin T, Brown AHD, van Hintum ThJL, Morales EAV, Eds. Core Collections of Plant Genetic Resources. Rome, Italy: IPGRI p. 23-34.

Wang JC, Hu J, Zhang CF, Zhang S. 2007. Assessment on evaluating parameters of rice core collections constructed by genotypic values and molecular marker information. Rice Science 14(2), 101-110. http://dx.doi.org/10.1016/s1672-6308(07) 60015-8.

Xu HM, Qiu YX, Hu J, Wang JC. 2004. Methods of constructing core collection of crop germplasm by comparing different genetic distances, cluster methods and sampling strategies. Acta Agronomica Sinica 30, 932-936.

Yadav S, Singh A, Singh MR, Goel N, Vinod KK, Mohapatra T, Singh AK. 2013. Assessment of genetic diversity in Indian rice germplasm (Oryza sativa L.): use of random versus trait-linked microsatellite markers. Journal of Genetics 92(3), 545-57. http://dx.doi.org/10.1007/s12041-013-0312-5.

Yan L, Feng Y, Yang CY, Shi XL, Zhang MC. 2012. The character of protein and oil content distribution among introgression lines using Jidou12 as recipient parent. Acta Agriculturae Boreali-Sinica 27, 87-92.

Zewdie Y, Tong NK, Bosland P. 2004. Establishing a core collection of Capsicum using a cluster analysis with enlightened selection of accessions. Genetic Resources and Crop Evolution 51, 147-151.http://dx.doi.org/10.1023/b:gres.0000020 858.96226.38.

Zhang JW, Han FX, Sun JM, Yu FK, Ma L, Chen MY, Zhang JY, Yan SR, Yang H. 2011a. Genetic variation of the protein content and correlation between protein content and main agronomic characters of soybean. Journal Plant Genetic Resources 12, 501-506.

Zhang P, Jinquan L, Xiaoling L, Xiangdong L, Xingjuan Z, Yonggen L. 2011. Population structure and genetic diversity in a rice core collection (Oryza sativa L.) investigated with SSR Markers. PLoSONE 6(12), 1-13. http://dx.doi.org/10.1371/journal.pone.0027565.

Zhang P, Liu X, Tong H, Lu Y, Li J. 2014. Association mapping for important agronomic traits in core collection of rice (Oryza sativa L.) with SSR markers. PLoS ONE 9(10), 1-16. http://dx.doi.org /10.1371/ journal.pone.0111508.